Glyma18g12750 - SoyBase

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Report for Sequence Feature Glyma18g12750

Feature Type:	gene_model
Chromosome:	Gm18
Start:	12021188
stop:	12024109
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g12750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06520	AT	Annotation by Michelle Graham. TAIR10: glycerol-3-phosphate acyltransferase 1 \| chr1:1994170-1996067 REVERSE LENGTH=585	SoyBase	E_val: 0	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0048235	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen sperm cell differentiation	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups	SoyBase	N/A	ISS
GO:0090447	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycerol-3-phosphate 2-O-acyltransferase activity	SoyBase	N/A	ISS
PTHR15486	Panther	ANCIENT UBIQUITOUS PROTEIN	JGI		ISS
PF01553	PFAM	Acyltransferase	JGI		ISS
UniRef100_G7K3C7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ER glycerol-phosphate acyltransferase n=1 Tax=Medicago truncatula RepID=G7K3C7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N0X0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0X0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g12750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g12750

Paralog	Evidence	Comments
Glyma08g42210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g12750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g107100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g12750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g12750

Limit To All Plant Sequences

>Glyma18g12750.1   sequence type=CDS   gene model=Glyma18g12750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTGGCTTGCAAATTGGGTCATGAACCAAGTGCTTGTTAAATCATGTTATGGATTTGCAAGAAAACTTAAAAGCCATGGGTTTCATTGGGGTGATCTTTCATCCAAACCATTGCATCAACCTTCCCCTTTCCCTAATATTGACAAGTGTGATTTGGAGTGTAGAGGGTCACAAACCCTAGCTTGTGACTTTCACAAAGTCCTCTTAAGGACTCATTCCTTCTTTCCCTATTTCATGCTTGTTGCCTTTGAAGGTGGAAGCATTTTTAGGGCATTCTTCTTGCTTTGTTCATGCCCTATGCTGTGGATCTTAAACTATGAAATGAAGCTTAGGGTCATGATCTTCATCTCCTTTTGTGGCCTCAGAATGAAGGACATGGAAAACACTTCAAGGGCAGTTTTGCCGAAGTTCTACTTGGAGAACCTCAACCTTGAGGCCTATGAGGTAGTGGCTTCAGTAGGGTCCAGAGTTTTCTTCACCACTATGCCTAAAGTGATGGTTGAAGGGTTTCTCAAGGAGTATTTGAATGCTGATGCTGTTATAGCCACAGAATTGCACACTTCTGGTTGTTACTTCACTGGTTTGCTCTCTAAGTCTGGTTTGCTTGTGAAGCATAGTGCCCTCATGGACTATTTTGGAGATACAAAGCCTGACCTTGGGATTGGCAACACAAGTCTTCATGATCAGCTTTTTATTTCTCTTTGCAAGGAGGCTTATGTGGTGATCAATGAAGAGGGCAAAGTGATGCCAAGAAACAAATATCCAAAGCCCTTAATATTTCATGATGGAAGGCTAGCATTTTTGCCTACTCCTTCCGCAACCCTTCTTATGTTCATGTGGCTTCCCCTTGGATTTCTGATGGCCATTTACAGAATTTTTCTGGGGGTTTTCCTTTGTTGCAAATTTACATTGGCGTTAGGAATATGGAGTGGACTAATTCTGAATTTCAATGACAAGAACCAACAAAGATCAGAGTCAAACAAAGGGGTGCTCTATGTGTGTAGCCACAGGACTCTCATGGATCCAATTTTTCTTAGCATAACGCTGGGGAGGCGTTTGACTGCTGTCACATACAGCTTAAGCAAGGTGTCTGAATTGATAGCCCCTATTAGGACAATGAGACTCACAAGGGACAGAGAACAAGACGGGGAAACTATGAAAAGGTTGCTTTGTGAAGGGGATTTGGTGGTGTTCCCTGAAGGAACAACTTGTAGGGAGCCATATTTACTAAGGTTCAGTTCTTTGTTTGCTGAACTTGCTGATGAGATTGTGCCTGTGGCTATGAATGCTCATGTGACCATGTTCTATGGGACCACAGCCAGTGGACTAAAGGTCTTGGACCCTATTTTCTTCTTCATGAACCCTTGGCCAAGATATGACATTCAAGTCCTTGGAAAGGTTCCTAGAGAACTCACATGTGCTGGAGGTAGGTCTAGTCATGAAGTGGCAAATTACATACAGAGGCAGTTGGCTGATGCTTTAGGGTTTGAGTGCACCAACCTTACAAGGAGGGATAAATATATGATGCTGGCTGGCAATGAAGGGGTTGTTCAAGAAAAGAAGGGGAGAAGATTCTGCTAA

Predicted protein sequences of Glyma18g12750

Limit To All Plant Sequences

>Glyma18g12750.1   sequence type=predicted peptide   gene model=Glyma18g12750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVWLANWVMNQVLVKSCYGFARKLKSHGFHWGDLSSKPLHQPSPFPNIDKCDLECRGSQTLACDFHKVLLRTHSFFPYFMLVAFEGGSIFRAFFLLCSCPMLWILNYEMKLRVMIFISFCGLRMKDMENTSRAVLPKFYLENLNLEAYEVVASVGSRVFFTTMPKVMVEGFLKEYLNADAVIATELHTSGCYFTGLLSKSGLLVKHSALMDYFGDTKPDLGIGNTSLHDQLFISLCKEAYVVINEEGKVMPRNKYPKPLIFHDGRLAFLPTPSATLLMFMWLPLGFLMAIYRIFLGVFLCCKFTLALGIWSGLILNFNDKNQQRSESNKGVLYVCSHRTLMDPIFLSITLGRRLTAVTYSLSKVSELIAPIRTMRLTRDREQDGETMKRLLCEGDLVVFPEGTTCREPYLLRFSSLFAELADEIVPVAMNAHVTMFYGTTASGLKVLDPIFFFMNPWPRYDIQVLGKVPRELTCAGGRSSHEVANYIQRQLADALGFECTNLTRRDKYMMLAGNEGVVQEKKGRRFC*

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